(Here photos on Cambridge exam "lifestyle")

Pietro Lio'

I am a Senior Lecturer in the Computer Laboratory which is the department of Computer Science of the University of Cambridge and I am a member of the Artificial Intelligence group of the Computer Laboratory.

I have an interdisciplinary approach to research and teaching due to the fact that I hold a PhD in Complex Systems and Non Linear Dynamics (School of Informatics, dept of Engineering of the University of Firenze, Italy) and a PhD in (Theoretical) Genetics (University of Pavia, Italy).

Affiliations and links: Cambridge Computational Biology Institute; Cambridge Neuroscience, Infectious diseases

Office: FC20 (first floor central corridor) tel: +44 (0)1223-763604; E_mail: Pietro.Lio at cl.cam.ac.uk; (big attachments only to pietro.lio2 at gmail.com)

Just Accepted or submitted:

SB 6.0 Biobrick at Imperial: Reducing atmospheric CO2 by optimizing the consumption from synthetic organisms: accepted at SB 6.0 http://sb6.biobricks.org/

M Brilli, P Liò, V Lacroix and M-F Sagot Short and long-term genome stability analysis of prokaryotic genomes BMC Genomics

It measures like me: An IoTs algorithm in WSNs based on Heuristics
Behaviour and Clustering Methods Ad Hoc Networks

The BMC Bioinformatics (guest editors Nicosia and Lio') special issue (vol 14) after ICARIS will be out end of March 2013

Comorbidity: a multidimensional approach (submitted)

Modeling TGF-\beta in cancer tissue dynamics (submitted)

L. Bianchi, P. Fernandes, P. Lio' Improving collective awareness in education about the privacy and ethical issues connected with the genome technologies. Future Education Conference.

Speeding up the transition to collective awareness (IEEE International Conference on Communications 2013: IEEE ICC'13 - Workshop on Beyond Social Networks: Collective Awareness)

C Angione, G Carapezza, J Costanza, P Lio', G. Nicosia The role of the genome in the evolution of the complexity of metabolic machines. Proceedings of the European Conference on Complex Systems 2013, Gilbert, Thomas; Kirkilionis, Markus; Nicolis, Gregoire (Eds.) Springer Verlag
http://www.springer.com/physics/complexity/book/978-3-319-00394-8

A Bansal, S Azad and P Lio’ Malaria Incidence Forecasting and its Implication to Intervention Strategies in South East Asia Region. Proceedings of the European Conference on Complex Systems 2013, Gilbert, Thomas; Kirkilionis, Markus; Nicolis, Gregoire (Eds.) Springer Verlag
http://www.springer.com/physics/complexity/book/978-3-319-00394-8

P. Lio', L. Jacovella, L Bianchi, and V Nguyen Information Filtering and Learning: from heuristics to social eudaimonia. Proceedings of the European Conference on Complex Systems 2013, Gilbert, Thomas; Kirkilionis, Markus; Nicolis, Gregoire (Eds.) Springer Verlag.
http://www.springer.com/physics/complexity/book/978-3-319-00394-8

Y. Shavit P. Lio' CytoHiC: A Cytoscape Plugin For Visual Comparison Of Hi-C Networks Bioinformatics , 2013 Mar 18

C Angione, G Carapezza, J Costanza, P Lio', G. Nicosia Multi objective design for bacterial communication networks (ICC- MoNaCom) LNCS Springer Verlag

C Angione, G Carapezza, J Costanza, P Lio', G. Nicosia 150-DH639 Pareto epsilon-Dominance and Identifiable Solutions for
BioCAD Modeling (Design Automation Conference 50) Proceedings

S. Balasubramaniam, P. Lio' et al. A Review of Experimental Opportunities for Molecular Communication
NANOCOMNET

F. Castiglione et al. Physio-Environmental Sensing and Live Modeling. Interactive Journal of Medical Research

P. Lio' Pathways to P4 medicine (Biostec2013; paper for the keynote lecture)
Springer

S. Balasubramaniam and P. Lio' Multi-hop Conjugation based Bacteria Nanonetworks, IEEE Transactions on NanoBioscience

M. Moni and P. Lio' Comparing viral (HIV) and bacterial (Staphylococcus aureus) infection of the bone tissue (Biostec 2013) Springer

Carapezza G, Umeton R, Costanza J, Angione C., Stracquadanio G, Papini A Lio' P, Nicosia G Efficient Behavior of Photosynthetic Organelles via Pareto Optimality, Identifiability and Sensitivity Analysis. ACS Synthetic Biology

E. Vicenzi, P. Lio, G. Poli The Puzzling Role of CXCR4 in Human Immunodeficiency Virus Infection
Theranostics. 2013;3(1):18-25. doi: 10.7150/thno.5392. Epub 2013 Jan 13

C. Angione, P. Lio' and G. Nicosia How to Compute with Metabolism in Bacteria? Ercim,

C Angione, G Carapezza, J Costanza, P Lio', G. Nicosia Rational Design of Organelle Compartments in Cells. Nettab 2012 (Integrated Bio-Search), http://www.nettab.org/2012/progr.html

Angione, C. et al. (2012). Rational design of organelle compartments in cells. EMBnet. journal, 18(B): p. 20.

C Angione, G Carapezza, J Costanza, P Lio', G. Nicosia. Robust Design of Microbial Strains. Bioinformatics December 1, 2012, 28 (23)

S Haider, L Cordeddu, M Movassagh, E Robinson, A Vujic, L Siggens,
M Choy, M Goddard, P Lio' , R Foo Landscape of DNA repeat elements in human heart failure. Genome Biology

E. Bartocci, P. Lio', E. Merelli, and N. Paoletti Multiple verification in complex biological systems: the bone remodelling case study. Special issue of LNBI Transactions on Computational Systems Biology on "Computational models for cell processes".

P. Lio', N. Paoletti, M. Moni, E. Merelli and M. Viceconti. Modeling osteomyelitis. BMC Bioinformatics (Special issue on Clinical Bioinformatics).

P. Lio', E. Merelli, and N. Paoletti Disease processes as hybrid dynamical systems accepted HSB 2012 First International Workshop on
Hybrid Systems and Biology

S. Xie, A. Lawniczak, S. Krishnan and Pietro Lio'.
Wavelet Kernel Principal Component Analysis in Noisy Multi-scale Data Classification. Computational Mathematics

Lio' P., C. Angelini, I. De Feis and V. Nguyen
Statistical approaches to use a model organism for regulatory sequences
annotation of newly sequenced species. PLoS ONE Link.

P. Lio', L. Bianchi, V. Nguyen and S. Kitchovitch
Risk perception, heuristics and epidemic spread. In Modeling the interplay between human behavior and spread of infectious diseases
Editor(s) Alberto D'onofrio, Piero Manfredi . Springer Verlag.

N. Paoletti, P. Lio', E. Merelli and M. Viceconti. Multi-level computational modeling and quantitative analysis of bone remodeling IEEE/ACM Transactions on Computational Biology and Bioinformatics

Best Paper award: Computing with Metabolic Machines with Claudio Angione, Giovanni Carapezza, Jole Costanza, Giuseppe Nicosia Turing 100 conference (http://www.turing100.manchester.ac.uk/)

Group Members
Research
Teaching
Publications (october 2012)
Books
Awards
Invited Talks
Lecturer, Summer school in Bioinformatics, (Biology Computation and Information), 10-14 September 2013
PhD student Claudio Angione selected for the Heidelberg Laureate Forum http://www.heidelberg-laureate-forum.org/
Invited speaker ECCS 2013 satellite: Modelling the complexity of the immune system, 16-20 September, Barcelona.
Co-organisation of satellite workshop on Complexity in Online Social Networks and Big Data at ECCS 2013, 16-20 September, Barcelona
Co-organisation of ECAL 2013 Artificial Life, Taormina, 216 submissions and 12 satellite workshops!!
Invited, August 18 – 23, 2013, Dagstuhl Perspectives Workshop 13342 ICT Strategies for Bridging Biology and Precision Medicine
Plenary Speaker at ICARIS 2013 In Nottingham (27-29 August)
co-organiser of BioP4Med - "Un-conference" at Instituto Gulbenkian de Ciência, Oeiras, PT June 24-25, 2013
Co-organisation of the 3rd International Workshop on Molecular and Nanoscale Communication (MoNaCom) for ICC 2013, Budapest. Link to CFP
Speaker (Improving collective awareness and education about the privacy and ethical issues connected with the genome technologies): The future of Education conference, Florence, 16-17 June
DAC 50 (Design Automation Conference again!), Austin Texas.
Speaker at International Summer School on Nanocommunications, 21-23 May, The Nanocommunications Center, Tampere institute of technology
9 May - Attending Insigneo: In silico Medicine, Sheffield
Keynote Speaker at Bioinformatics 2013 (Biostec 2013), 11-14 February Barcelona, Spain- A twitter I found
CMSB 2012 The 10th Conference on Computational Methods in Systems Biology 3-5 October 2012 The Royal Society, London, UK
ECCS 2012 Conference on Complex Systems; talks at satellites (1) Genomic complexity, (2) Data-driven modeling of contagion processes; (3) Information Processing In Complex Systems (IPCS'12)
ICARIS 2012 (Taormina)
Dagstuhl on Structure Discovery in Biology
Invited talk on Computational immunology at KAVLI Royal Society at Chicheley Hall (details and action)
Talk on Modeling tgfbeta in bone cancer at Virtual Physiological Human (VPH) Pompeu Fabra
Invited talk at VI Giornata del Dottorato di Alessandria
Invited Talk in Granada , the speakers
Organiser of Social Networks and SocialMedia
Organiser of ICARIS 2011 (Cambridge)
Organiser of BIOCAD satellite workshop of ICSB 2011 - Heidelberg, 27 August 2011
Talk on on Pareto Optimal Fronts in Bacterial Knockout Strategies at the Design Automation Conference at DAC48 Design Automation Conference 5-10 June 2011, San Diego, US


Interesting Conferences
Valigie (personal)