T. M. K. Cheng, Yu-En Lu, P. C. Guest, H. Rahmoune, L. W. Harris, Lan Wang, D. Ma, V. Stelzhammer, Y. Umrania, M. T. Wayland, P. Lio' , and S. Bahn Identification of targeted analyte clusters for studies of schizophrenia Mol Cell Proteomics. 2010 Mar;9:510-22. Epub 2009 Dec 10

Y Song, S Azad, P Lio'.  A new approach for epileptic seizure detection using extreme learning machine.  BIOSIGNALS 2010

Sorathiya A, Bracciali A, Liò P. Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S67.

M Fondi, G Emiliani, P Liò, S Gribaldo and R Fani  The molecular evolution of histidine biosynthesis in Archaea; insights into the his genes structure and organization in LUCA  J Mol Evol. 2009 Nov;69(5):512-26. Epub 2009 Nov 3.

Milanesi L, Romano P, Castellani G, Remondini D, Liò P Trends in modeling Biomedical Complex Systems  BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:I1.

Richard C. van der Wath, Anne Wilson, Elisa Laurenti, Andreas Trumpp, Pietro Liò Estimating Dormant and Active Hematopoietic Stem Cell Kinetics through Extensive Modeling of Bromodeoxyuridine Label-Retaining Cell Dynamics PLoS One. 2009 Sep 22;4(9):e6972.

Viet-Anh Nguyen and Pietro Liò

Measuring similarity between gene expression profiles: A Bayesian

approach BMC Genomics. 2009 Dec 3;10 Suppl 3:S14.

C Angelini, I De Feis, R van der Wath, V Nguyen, P. Liò

Combining replicates and nearby species data: methodologies, examples and results interpretation  6th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics 2009, LNCS

G. Bella, P. Liò Analysing the microRNA-17-92/Myc/E2F/RB Compound Toggle Switch by Theorem Proving Nettab 2009

G. Bella and P Lio' Formal Analysis of the Genetic Toggle

CMSB 2009 LNBI Springer

T. Cheng, E. Yue En Lu, P Lio' Identification of structurally important amino acids in proteins by graph-theoretic measures 

StReBio'09 ACM

I X.Y. Leung, P Hui, P Lio', J Crowcroft Towards real-time community detection in large networks  Physical Review E

E. Schwarz, S. Bahn, Liò P.

Clinical Bioinformatics for Complex Disorders: a schizophrenia case study. BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S6.

S Kitchovitch, Y Song, I Leung and Liò P.

Using Mutual Information and Models of Evolution for improved pattern detection IJCBS09  Shangai IEEE Computer Society

S. Kitchovitch, Y Song, R van der Wath, P Lio'

Substitution matrices and mutual information approaches to modeling evolution. LNCS - MALIOB 2009 Machine learning and intelligent optimization in bioinformatics

A. Wilson, E Laurenti; G Oser, R van der Wath, W Blanco; M Jaworski, S Offner, C Dunant, L Eshkind; E Bockamp, P Lio', R MacDonald; A Trumpp 

Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. 

Cell 2008 135:1118-29.

V Nguyen, Z Koukolikova, F Bagnoli, P Lio' 

Noise and nonlinearities in high-throughput data. 

J. Statistical Mechanics  2009 P01014

M Brilli, A Mengoni, M Fondi, M Bazzicalupo, P Liò and R Fani (2008) 

Analysis of plasmid genes by phylogenetic profiling and visualization of homologous relationships using Blast2Network 

BMC Bioinformatics BMC Bioinformatics 2008, 9:551

V.A. Nguyen, Z. Nicola-Koulikova, F. Bagnoli, P. Lio' 

Bayesian inference on hidden knowledge in high-throughput molecular biology data. 

Lectures Notes in Artificial Intelligence (PRICAI-08) LNAI volume 5351, "PRICAI 2008: Trends in Artificial Intelligence", pages 829-838.

F. Stajano, L. Bianchi, P.  Liò, D. Korff  (2008)

Forensic Genomics: kin privacy, driftnets and other open questions 

WPES 2008 - ACM Workshop on Privacy in the Electronic Society.

C. Angelini, L. Cutillo, I. De Feis, R. van der Wath, P.  Liò (2008)  

Combining experimental evidences from replicates and nearby species data for annotating novel genomes. 

In COLLECTIVE DYNAMICS: TOPICS ON COMPETITION AND COOPERATION IN THE BIOSCIENCES: A Selection of Papers in the Proceedings of the BIOCOMP2007 International Conference, AIP Proceedings, Vol. 1028.

P Lio', C Angelini, I De Feis, L Cutillo and R van der Wath 

Statistical issues for combining replicates and nearby species data and different omics 

Proceedings The Art and Science of Statistical Bioinformatics 

The 27th Leeds Annual Statistical Research Workshop 15th - 17th July 2008

A. Sorathyia, T. Jucikas, S. Piecewicz, S. Sengupta and P. Lio'  (2008)

Searching for glycomics role in vasculogenesis. 

CIBB 2008 COMPUTATIONAL INTELLIGENCE METHODS FOR BIOINFORMATICS AND BIOSTATISTICS - Lecture Notes in Bioinformatics (LNBI).

R. van der Wath and P. Lio'  (2008)

A stochastic single cell based model of BrdU measured Hematopoietic stem cell kinetics

The 6th Conference on Computational Methods in Systems Biology , CMSB 2008 (LNCS)

T Cheng, Yu-En Lu, Vendruscolo M,  P. Lio', Blundell T 

Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms. 

PLoS Comput Biol 4(7): e1000135. doi:10.1371/journal.pcbi.100013

R. van der Wath P. Lio' (2008) 

A stochastic Multi-Agent model of stem cell differentiation, 

 Eighth International Conference on Cellular Automata for Research and Industry, LNCS ACRI 2008

E van der Wath, R van der Wath, F. Frati, F. Nardi , Liò P. 

Bayesian phylogeny on Grid 

Bioinformatics Research and Development, Communications in Computer and Information Science, 2008, 404-416

E. Schwarz, S. Bahn, Liò P. (2008)

Combining Molecular and Physiological Data of Complex Disorders 

Bioinformatics Research and Development, Lecture Notes in Bioinformatics,  (LNBI) BIRD 

Liò P., M. Brilli and R. Fani (2008)

Topological metrics in Blast data mining: plasmid and nitrogen-fixing proteins case studies. 

Communications in Computer and Information Science, Bioinformatics Research and Development, 13: 207-220 

Z. Nicola-Koulikova,  P. Liò and F. Bagnoli (2008)

Inference on Missing Values in Genetic Networks Using High-Throughput Data 

Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics

Lecture Notes Computer Science Springer Verlag , Volume 4973/2008,  106-116

M. Brilli, R. Fani,  Liò P  (2008) 

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes  

Briefing in Bioinformatics  9:34-45.