Computer Laboratory

Computational Biology Group Members

This page contains a list of the current and past members of the Computational Biology Group, which is itself part of the Artificial Intelligence Group of the Computer Laboratory.

Each person's name is followed by their CRSid (if they have one) and their office number in the William Gates Building.

The easiest way to contact someone is by e-mail. Computer Laboratory e-mail addresses are of the form crsid@cam.ac.uk or Firstname.Lastname@cl.cam.ac.uk.

Current Members

Academic Staff

Dr Pietro Liò pl219 FC20 Reader in Computational Biology Machine learning and computational models in health Predictive models in personalised medicine Combining multi-scale, multi-omics and multi-physics modelling of molecules-cell-tissue-organ interactions Developing and testing methodologies for modelling biomedical systems Super meta: Meta analysis and omics integration informatics

Research Associates

Dr Gianluca Ascolani ga304 FE10 Research Associate in Computational Biology Physics of cancer, Modelling tumour growth Collective behaviour of migrating cells Bone remodelling Crowding and exclusion processes, Complex renewal processes

Research Students

Annalisa Occhipinti ao356 FE12 PhD Student (4th Year)
Thomas Brouwer tab43 FC17 PhD Student (3rd Year) Bayesian matrix factorisation methods for analysing and integrating biological datasets
Max Conway mjc233 FE10 PhD Student (3rd Year)
Hui Xiao hx239 FC14 Research Assistant in Computational Biology, PhD Student (3rd Year) Multi-omic data integration in mammalian early embryonic development and human diseases
Helena Andrés Terre ha376 FE10 PhD Student (2nd Year)
Giovanna Maria Dimitri gmd43 FC14 PhD Student (2nd Year), MPhil in Advanced Computer Science (2014-2015)
Pablo Spivakovsky-González ps713 FC03 PhD Student (2nd Year)
Petar Veličković pv273 FE14 Research Assistant in Computational Biology, PhD Student (2nd Year), Computer Science Tripos, Part II (2014-2015) Cross-modal machine learning algorithms on complex networks
Tiago Azevedo tmla2 FE12 PhD Student (1st Year)
Simeon Spasov ses88 FE21 PhD Student (1st Year)
Duo Wang wd263 FC03 PhD Student (1st Year), MPhil in Advanced Computer Science (2015-2016) Bridging computer science with neuroscience towards a new understanding of reasoning
Jin Zhu jz426 FE12 PhD Student (1st Year) Medical image processing and clinical decision support system

Master's Students

Zhenyu Cai zc263 Natural Sciences Tripos, Part III Clustering and energy-based approaches to sparsifying neural networks
Cătălina Cangea ccc53 MPhil in Advanced Computer Science Cross-modal approaches to audiovisual classification
Sivo Daskalov sd760 MPhil in Advanced Computer Science
Laurynas Karazija lk378 Computer Science Tripos, Part III Automatic inference of X-CNN topologies
Edgaras Liberis el398 Computer Science Tripos, Part III Antibody binding residue prediction
Robert Nagy rn345 Natural Sciences Tripos, Part III
Alex Rakowski agr37 Computer Science Tripos, Part III
Rui Zhang rz286 MPhil in Advanced Computer Science

Undergraduate Students

Ioana Bica ib354 Computer Science Tripos, Part II Comparative analysis of neural network architectures for epigenetics inference
Momchil Peychev mp739 Computer Science Tripos, Part II Experimental study on the properties of disentangled autoencoders
Tudor Ţiplea tpt26 Computer Science Tripos, Part II An end-to-end control policy system for the GameBoy platform

Past Members

Research Associates

Viet Anh Nguyen Research Associate, PhD Student (2007-2011) Bayesian approaches to biological network predictions
Julien Mozziconacci Research Associate
Elizabeth van der Wath Research Associate

Research Students

Naruemon Pratanwanich PhD Student (2012-2016) Probabilistic latent variable modelling for integrated biological data
Yoli Shavit PhD Student (2012-2015) Algorithms for reconstructing the 3D genome architecture
Claudio Angione PhD Student (2011-2015) Computational methods for multi-omic models of cell metabolism and their importance for theoretical computer science
Mohammad Ali Moni PhD Student (2011-2015) Clinical bioinformatics and computational modelling for disease comorbidities diagnosis
Yuedong Song PhD Student (2008-2015) Electroencephalogram machine learning to assist diagnosis and treatment of epilepsy
Azree Nazri PhD Student (Graduated in 2012; co-supervised)
Syed Haider PhD Student (2009-2012) Computational systems biology-based feature selection for cancer prognosis
Stephan Kitchovich PhD Student (2008-2012) Computational modelling and analysis of seasonal influenza transmission and evolution
Anilkumar Sorathiya PhD Student (2007-2011) Computational modelling approaches to HIV-1 dynamics
Ian Leung PhD Student (2008-2011) Fast network analysis and applications in real-world networks
Richard van der Wath PhD Student (2005-2010) Computational modelling of hematopoietic stem cell division and regulation dynamics

Master's Students

Benjamin Day Natural Sciences Tripos, Part III (2015-2016) Combining machine learning & multilayer network theory
Wing Cheung Kenneth Lui MPhil in Advanced Computer Science (2015-2016) Towards reproducible and intelligible data anlytic workflow on interoperable electronic health records (EHR) data
Shuo Zhang MPhil in Advanced Computer Science (2015-2016) Mining drug-target interactions by Bayesian matrix factorisation
William Jones MPhil in Advanced Computer Science (2014-2015) In silico prediction of anti-cancer drug sensitivity
Yiding Lu MPhil in Advanced Computer Science (2014-2015) Link prediction in drug-target interactions network using similarity indices
Otilia Stretcu MPhil in Advanced Computer Science (2014-2015) Machine learning approaches for microscopic image mining
Haoming Xu MPhil in Advanced Computer Science (2013-2014) Machine learning approach for integrating molecular and clinical data to predict human disease network

Undergraduate Students

Michael Painter Computer Science Tripos, Part II (2015-2016) Spectral image analysis for medical imaging
Artjoms Iškovs Computer Science Tripos, Part II (2014-2015) Predicting drug-pathway interactions using the correlated topic model
Kittinun Phatpanichot Computer Science Tripos, Part II (2013-2014) Inferring drug's pathway-based groups from differential gene expression data using a topic model
Stefan Stojanović Computer Science Tripos, Part II (2013-2014) Computational modelling of diabetes
Rolandas Glotnis Computer Science Tripos, Part II (2012-2013) Optimising a multi-objective problem solving algorithm through improvements in search functions

Visitors

Marco Botta Sabbatical
Xiaofeng Lu Visitor
Eric Yu-En Lu Visitor (HKU)
Kuang Xu Visitor (HKU)
Cyrus Chan Visitor (CUHK)
Francesco Piazza Visitor (U. Orleans)