Methods and Models in Genomics
Pietro Lio'

Schedule:

 

Lecture

Topic

Notes

 

Table of Contents

ps

pdf

ppt

1

Complexity of Algorithms for Aligning sequences and data mining

 

pdf

 

2

Phylogeny: Parsimony: Fitch and Sankoff; Distane: UPGMA

 

pdf

 

3

Phylogeny: Neighbour Joining and Maximum Likelihood

 

 

4

Phylogeny: Incorporating structure; Statistical Tests in phylogeny

 

 

5

Comparative Genomics: bacterial genomes

 

 

6

Comparative Genomics: eukaryotic genomes

 

 

7

Models of Chromosome breakage

 

 

8

Models of speciation

 

 

Dataset 1
Program 1 zip
Dataset 2
Program 2 zip
Program 3 zip